3VW7 Signaling Protein Antagonist date Aug 07, 2012
title Crystal Structure Of Human Protease-Activated Receptor 1 (Pa With Antagonist Vorapaxar At 2.2 Angstrom
authors C.Zhang, Y.Srinivasan, D.H.Arlow, J.J.Fung, D.Palmer, Y.Zheng, H.F A.Pandey, R.O.Dror, D.E.Shaw, W.I.Weis, S.R.Coughlin, B.K.Kobilk
compound source
Molecule: Proteinase-Activated Receptor 1, Lysozyme
Chain: A
Synonym: Par-1, Coagulation Factor II Receptor, Thrombin Re Endolysin, Lysis Protein, Muramidase;
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Other_details: Chimera Protein Of Residues 86-395 Form Prot Activated Receptor 1 (P25116, Par1_human), Lyzosyme From Enterobacteria Phage T4 (P00720, Lys_bpt4) And Residues 303 Proteinase-Activated Receptor 1 (P25116, Par1_human)
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.044 71.460 172.187 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, NA, OLC, VPX BindingDB enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution crystal structure of human protease-activated receptor 1., Zhang C, Srinivasan Y, Arlow DH, Fung JJ, Palmer D, Zheng Y, Green HF, Pandey A, Dror RO, Shaw DE, Weis WI, Coughlin SR, Kobilka BK, Nature. 2012 Dec 20;492(7429):387-92. doi: 10.1038/nature11701. Epub 2012 Dec 9. PMID:23222541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (3vw7.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 3VW7
  • CSU: Contacts of Structural Units for 3VW7
  • Structure Factors (351 Kb)
  • Retrieve 3VW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VW7 from S2C, [Save to disk]
  • Re-refined 3vw7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VW7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VW7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vw7] [3vw7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VW7
  • Community annotation for 3VW7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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