3VX1 Hydrolase date Sep 06, 2012
title Crystal Structure Of Alpha-Amylase From Aspergillus Oryzae
authors M.Sugahara
compound source
Molecule: Alpha-Amylase A Type-12
Chain: A
Synonym: 1,4-Alpha-D-Glucan Glucanohydrolase, Taka-Amylase
Ec: 3.2.1.1
Organism_scientific: Aspergillus Oryzae
Organism_common: Yellow Koji Mold
Organism_taxid: 510516
Strain: Atcc 42149 Rib 40
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.368 66.678 131.551 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, NAG enzyme Hydrolase E.C.3.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3vx1.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 3VX1
  • CSU: Contacts of Structural Units for 3VX1
  • Structure Factors (189 Kb)
  • Retrieve 3VX1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VX1 from S2C, [Save to disk]
  • Re-refined 3vx1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VX1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VX1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VX1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vx1_A] [3vx1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VX1: [Aamy ] by SMART
  • Other resources with information on 3VX1
  • Community annotation for 3VX1 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science