3VY7	Sugar Binding Protein	date	Sep 21, 2012
title	Crystal Structure Of Human Pancreatic Secretory Protein Zg16 (Alpha-D-Mannosyl)-L-Serine
authors	M.Kanagawa, Y.Yamaguchi
compound		source
Molecule: Zymogen Granule Membrane Protein 16 Chain: A Fragment: Unp Residues 21-159 Synonym: Zymogen Granule Protein 16, Hzg16, Secretory Lecti Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Zg16 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcold-I
symmetry	Space Group: P 21 21 2	R_factor 0.186 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.800 73.000 30.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.14 Å
ligand	CL, MAN, SER	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin., Kanagawa M, Liu Y, Hanashima S, Ikeda A, Chai W, Nakano Y, Kojima-Aikawa K, Feizi T, Yamaguchi Y, J Biol Chem. 2014 Jun 13;289(24):16954-65. doi: 10.1074/jbc.M113.539114. Epub, 2014 Apr 30. PMID:24790092

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (3vy7.pdb1.gz) 25 Kb LPC: Ligand-Protein Contacts for 3VY7 CSU: Contacts of Structural Units for 3VY7 Structure Factors (56 Kb) Retrieve 3VY7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VY7 from S2C, [Save to disk] Re-refined 3vy7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VY7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VY7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VY7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vy7_A] [3vy7] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VY7: [Jacalin ] by SMART

Other resources with information on 3VY7

Community annotation for 3VY7 at PDBWiki (http://pdbwiki.org)

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