3VZV	Ligase Ligase Inhibitor	date	Oct 16, 2012
title	Crystal Structure Of Human Mdm2 With A Dihydroimidazothiazol Inhibitor
authors	H.Shimizu, S.Katakura, M.Miyazaki, H.Naito, Y.Sugimoto, H.Kawato, T.Okayama, T.Soga
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Mdm2 Chain: A, B Fragment: Swib Domain, Unp Residues 25-109 Synonym: Double Minute 2 Protein, Hdm2, Oncoprotein Mdm2, P Protein Mdm2; Ec: 6.3.2.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mdm2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t3
symmetry	Space Group: P 21 21 21	R_factor 0.248 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.255 66.076 80.419 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	VZV	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Lead optimization of novel p53-MDM2 interaction inhibitors possessing dihydroimidazothiazole scaffold., Miyazaki M, Naito H, Sugimoto Y, Kawato H, Okayama T, Shimizu H, Miyazaki M, Kitagawa M, Seki T, Fukutake S, Aonuma M, Soga T, Bioorg Med Chem Lett. 2013 Feb 1;23(3):728-32. doi: 10.1016/j.bmcl.2012.11.091., Epub 2012 Dec 1. PMID:23266121

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (3vzv.pdb1.gz) 16 Kb Biological Unit Coordinates (3vzv.pdb2.gz) 16 Kb LPC: Ligand-Protein Contacts for 3VZV CSU: Contacts of Structural Units for 3VZV Structure Factors (110 Kb) Retrieve 3VZV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VZV from S2C, [Save to disk] Re-refined 3vzv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VZV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VZV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VZV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vzv] [3vzv_B] [3vzv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VZV

Community annotation for 3VZV at PDBWiki (http://pdbwiki.org)

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