3W11 Hormone Hormone Receptor Immune System date Nov 06, 2012
title Insulin Receptor Ectodomain Construct Comprising Domains L1- Complex With Human Insulin, Alpha-Ct Peptide(704-719) And F
authors M.C.Lawrence, B.J.Smith
compound source
Molecule: Insulin A Chain
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ins
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Yeast
Expression_system_taxid: 4932

Molecule: Insulin B Chain
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ins
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Yeast
Expression_system_taxid: 4932

Molecule: Monoclonal Antibody Fab 83-7 Fragment - Heavy Cha
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: Mouse
Expression_system_taxid: 10090
Expression_system_cell: Hybridoma Cell

Molecule: Monoclonal Antibody Fab 83-7 Fragment - Light Cha
Chain: D
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: Mouse
Expression_system_taxid: 10090
Expression_system_cell: Hybridoma Cell

Molecule: Insulin Receptor Domains L1-Cr
Chain: E
Fragment: Unp Residues 28-337
Synonym: Insulin Receptor L1-Cr; Ir310.T, Insulin Receptor Alpha;
Ec: 2.7.10.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Insr
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Lec8 Mutant
Expression_system_cell: Cho Cell

Molecule: Insulin Receptor Alpha-Ct Peptide
Chain: F
Fragment: Unp Residues 731-746
Synonym: Insulin Receptor Subunit Alpha
Ec: 2.7.10.1
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemical Synthesis
symmetry Space Group: P 2 3
R_factor 0.264 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.910 168.910 168.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.90 Å
ligand BMA, MAN, NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


E


Primary referenceHow insulin engages its primary binding site on the insulin receptor., Menting JG, Whittaker J, Margetts MB, Whittaker LJ, Kong GK, Smith BJ, Watson CJ, Zakova L, Kletvikova E, Jiracek J, Chan SJ, Steiner DF, Dodson GG, Brzozowski AM, Weiss MA, Ward CW, Lawrence MC, Nature. 2013 Jan 10;493(7431):241-5. doi: 10.1038/nature11781. PMID:23302862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (3w11.pdb1.gz) 199 Kb
  • LPC: Ligand-Protein Contacts for 3W11
  • CSU: Contacts of Structural Units for 3W11
  • Structure Factors (321 Kb)
  • Retrieve 3W11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W11 from S2C, [Save to disk]
  • Re-refined 3w11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W11
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W11, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w11_E] [3w11] [3w11_B] [3w11_A] [3w11_C] [3w11_F] [3w11_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3W11: [FU] [IGv] [IlGF ] by SMART
  • Other resources with information on 3W11
  • Community annotation for 3W11 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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