3W1F	Transferase Transferase Inhibitor	date	Nov 14, 2012
title	Crystal Structure Of Human Mps1 Catalytic Domain In Complex Ethoxy-6-(1-Methyl-1h-Pyrazol-4-Yl)-1h-Indazol-3-Yl)-2- Methylbenzenesulfonamide
authors	K.Kusakabe, N.Ide, Y.Daigo, Y.Tachibana, T.Itoh, T.Yamamoto, H.Has Y.Hato, K.Higashino, Y.Okano, Y.Sato, M.Inoue, M.Iguchi, T.Kanaza Y.Ishioka, K.Dohi, Y.Kido, S.Sakamoto, K.Yasuo, M.Maeda, M.Higaki H.Yoshizawa, Y.Baba, T.Shiota, H.Murai, Y.Nakamura
compound		source
Molecule: Dual Specificity Protein Kinase Ttk Chain: A Fragment: Catalytic Domain, Residues 516-820 Synonym: Phosphotyrosine Picked Threonine-Protein Kinase, P Ec: 2.7.12.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ttk, Mps1, Mps1l1 Expression_system: Cell-Free Synthesis Expression_system_vector_type: Plasmid
symmetry	Space Group: I 2 2 2	R_factor 0.233 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.773 108.177 113.062 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	1O5	enzyme	Transferase E.C.2.7.12.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Indazole-Based Potent and Cell-Active Mps1 Kinase Inhibitors: Rational Design from Pan-Kinase Inhibitor Anthrapyrazolone (SP600125)., Kusakabe K, Ide N, Daigo Y, Tachibana Y, Itoh T, Yamamoto T, Hashizume H, Hato Y, Higashino K, Okano Y, Sato Y, Inoue M, Iguchi M, Kanazawa T, Ishioka Y, Dohi K, Kido Y, Sakamoto S, Yasuo K, Maeda M, Higaki M, Ueda K, Yoshizawa H, Baba Y, Shiota T, Murai H, Nakamura Y, J Med Chem. 2013 Jun 13;56(11):4343-56. doi: 10.1021/jm4000215. Epub 2013 May 24. PMID:23634759

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (3w1f.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 3W1F CSU: Contacts of Structural Units for 3W1F Structure Factors (293 Kb) Retrieve 3W1F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3W1F from S2C, [Save to disk] Re-refined 3w1f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3W1F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3W1F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3W1F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3w1f] [3w1f_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3W1F: [S_TKc ] by SMART

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