3W1Y Transport Protein Ribosomal Protein date Nov 23, 2012
title Crystal Structure Of T Brucei Atg8.2 In Complex With E Coli
authors Y.A.Yuan, C.Wang
compound source
Molecule: Microtubule-Associated Protein 1a1b, Light Chain
Chain: A, B
Engineered: Yes
Organism_scientific: Trypanosoma Brucei Brucei
Organism_taxid: 999953
Strain: 9274 Gutat10.1
Gene: Tb927.7.3320
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S10
Chain: C
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Rpsj, Nuse, B3321, Jw3283
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.012 61.197 67.636 90.00 110.77 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3w1y.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (3w1y.pdb2.gz) 104 Kb
  • CSU: Contacts of Structural Units for 3W1Y
  • Structure Factors (229 Kb)
  • Retrieve 3W1Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W1Y from S2C, [Save to disk]
  • Re-refined 3w1y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W1Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W1Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W1Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w1y] [3w1y_C] [3w1y_A] [3w1y_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3W1Y: [Ribosomal_S10 ] by SMART
  • Other resources with information on 3W1Y
  • Community annotation for 3W1Y at PDBWiki (http://pdbwiki.org)

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