3W2S Transferase Transferase Inhibitor date Dec 03, 2012
title Egfr Kinase Domain With Compound4
authors S.Sogabe, Y.Kawakita, S.Igaki
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Kinase Domain, Unp Residues 696-1022
Synonym: Proto-Oncogene C-Erbb-1, Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb, Erbb1, Her1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.759 68.446 105.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SO4, W2R enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3w2s.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3W2S
  • CSU: Contacts of Structural Units for 3W2S
  • Structure Factors (191 Kb)
  • Retrieve 3W2S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W2S from S2C, [Save to disk]
  • Re-refined 3w2s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W2S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W2S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W2S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w2s] [3w2s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3W2S: [TyrKc ] by SMART
  • Other resources with information on 3W2S
  • Community annotation for 3W2S at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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