3W33	Transferase Transferase Inhibitor	date	Dec 07, 2012
title	Egfr Kinase Domain Complexed With Compound 19b
authors	S.Sogabe, Y.Kawakita
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A Fragment: Kinase Domain, Unp Residues 696-1022 Synonym: Proto-Oncogene C-Erbb-1, Receptor Tyrosine-Protein Erbb-1; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egfr, Erbb, Erbb1, Her1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac1
symmetry	Space Group: P 21 21 21	R_factor 0.197 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.878 69.175 104.424 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	SO4, W19	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design and synthesis of novel pyrimido[4,5-b]azepine derivatives as HER2/EGFR dual inhibitors., Kawakita Y, Seto M, Ohashi T, Tamura T, Yusa T, Miki H, Iwata H, Kamiguchi H, Tanaka T, Sogabe S, Ohta Y, Ishikawa T, Bioorg Med Chem. 2013 Apr 15;21(8):2250-61. doi: 10.1016/j.bmc.2013.02.014. Epub , 2013 Feb 22. PMID:23490150

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (3w33.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 3W33 CSU: Contacts of Structural Units for 3W33 Structure Factors (266 Kb) Retrieve 3W33 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3W33 from S2C, [Save to disk] Re-refined 3w33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3W33 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3W33

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3W33, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3w33_A] [3w33] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3W33: [TyrKc ] by SMART

Other resources with information on 3W33

Community annotation for 3W33 at PDBWiki (http://pdbwiki.org)

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