3W54 Oxidoreductase Oxidoreductase Inhibitor date Jan 21, 2013
title Crystal Structure Of Cyanide-Insensitive Alternative Oxidase Trypanosoma Brucei With Colletochlorin B
authors T.Shiba, Y.Kido, K.Sakamoto, D.K.Inaoka, C.Tsuge, R.Tatsumi, G.Tak E.O.Balogun, T.Nara, T.Aoki, T.Honma, A.Tanaka, M.Inoue, S.Matsuo H.Saimoto, A.L.Moore, S.Harada, K.Kita
compound source
Molecule: Alternative Oxidase, Mitochondrial
Chain: A, B, C, D
Ec: 1.-.-.-
Engineered: Yes
Organism_scientific: Trypanosoma Brucei Brucei
Organism_taxid: 5702
Gene: Aox
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Fn102
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: C 1 2 1
R_factor 0.185 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
228.017 137.920 63.058 90.00 106.08 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand FE, GOL, OH, RNB, SO4 enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the trypanosome cyanide-insensitive alternative oxidase., Shiba T, Kido Y, Sakamoto K, Inaoka DK, Tsuge C, Tatsumi R, Takahashi G, Balogun EO, Nara T, Aoki T, Honma T, Tanaka A, Inoue M, Matsuoka S, Saimoto H, Moore AL, Harada S, Kita K, Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4580-5. doi:, 10.1073/pnas.1218386110. Epub 2013 Mar 4. PMID:23487766
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (3w54.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (3w54.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (3w54.pdb3.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3W54
  • CSU: Contacts of Structural Units for 3W54
  • Structure Factors (1254 Kb)
  • Retrieve 3W54 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W54 from S2C, [Save to disk]
  • Re-refined 3w54 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W54 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W54
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W54, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w54_C] [3w54_A] [3w54_B] [3w54_D] [3w54]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3W54
  • Community annotation for 3W54 at PDBWiki (http://pdbwiki.org)

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