3W9K Lipid Binding Protein date Apr 05, 2013
title Crystal Structure Of Thermoacidophile-Specific Protein Stk_0 Complexed With Myristic Acid
authors T.Miyakawa, Y.Sawano, K.Miyazono, Y.Miyauchi, K.Hatano, M.Tanokur
compound source
Molecule: Fatty Acid-Binding Protein
Chain: A
Engineered: Yes
 Organism_scientific: Sulfolobus Tokodaii
Organism_taxid: 273063
Strain: 7
Gene: Stk_08120
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 2
R_factor 0.181 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.930 70.580 35.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MYR enzyme
Gene STK
Primary referenceA Thermoacidophile-Specific Protein Family, DUF3211, Functions as a Fatty Acid Carrier with Novel Binding Mode., Miyakawa T, Sawano Y, Miyazono KI, Miyauchi Y, Hatano KI, Tanokura M, J Bacteriol. 2013 Jul 8. PMID:23836863
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3w9k.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3W9K
  • CSU: Contacts of Structural Units for 3W9K
  • Structure Factors (176 Kb)
  • Retrieve 3W9K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W9K from S2C, [Save to disk]
  • Re-refined 3w9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3W9K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3W9K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W9K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w9k] [3w9k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3W9K
  • Community annotation for 3W9K at PDBWiki (http://pdbwiki.org)

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