3W9T Toxin date Apr 16, 2013
title Pore-Forming Cel-III
authors H.Unno, S.Goda, T.Hatakeyama
compound source
Molecule: Hemolytic Lectin Cel-III
Chain: A, C, G, B, F, E, D
Organism_scientific: Cucumaria Echinata
Organism_common: Sea Cucumber
Organism_taxid: 40245
symmetry Space Group: C 1 2 1
R_factor 0.239 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
219.800 228.650 133.020 90.00 127.13 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA, FRU, GAL, MG, PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1019 Kb) [Save to disk]
  • Biological Unit Coordinates (3w9t.pdb1.gz) 999 Kb
  • LPC: Ligand-Protein Contacts for 3W9T
  • CSU: Contacts of Structural Units for 3W9T
  • Structure Factors (1738 Kb)
  • Retrieve 3W9T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W9T from S2C, [Save to disk]
  • Re-refined 3w9t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W9T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W9T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W9T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w9t_E] [3w9t_F] [3w9t_B] [3w9t_C] [3w9t] [3w9t_G] [3w9t_D] [3w9t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3W9T: [RICIN ] by SMART
  • Other resources with information on 3W9T
  • Community annotation for 3W9T at PDBWiki (http://pdbwiki.org)

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