3WAN	Protein Binding	date	May 06, 2013
title	Crystal Structure Of Atg13 Lir-Fused Human Lc3a_2-121
authors	H.Suzuki, K.Tabata, E.Morita, M.Kawasaki, R.Kato, R.C.J.Dobson, T.Yoshimori, S.Wakatsuki
compound		source
Molecule: Autophagy-Related Protein 13, Microtubule-Associa Proteins 1a1b Light Chain 3a; Chain: A, B Fragment: Unp Residues 436-447, 2-121 Synonym: Autophagy-Related Protein Lc3 A, Autophagy-Related Ubiquitin-Like Modifier Lc3 A, Map1 Light Chain 3-Like Prot Map1amap1b Light Chain 3 A, Map1amap1b Lc3 A, Microtubule Associated Protein 1 Light Chain 3 Alpha; Engineered: Yes Other_details: The Fusion Protein Of Autophagy-Related Gene (Residues 436-447), Linker (Gly Ser) And Microtubule-Associ Proteins 1a1b Light Chain 3a (Residues 2-121)		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map1lc3a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
symmetry	Space Group: P 1 21 1	R_factor 0.174 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.730 47.880 77.080 90.00 94.22 90.00
method	X-Ray Diffraction	resolution	1.77 Å
ligand	MPD	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Basis of the Autophagy-Related LC3/Atg13 LIR Complex: Recognition and Interaction Mechanism., Suzuki H, Tabata K, Morita E, Kawasaki M, Kato R, Dobson RC, Yoshimori T, Wakatsuki S, Structure. 2013 Nov 25. pii: S0969-2126(13)00401-2. doi:, 10.1016/j.str.2013.09.023. PMID:24290141

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3wan.pdb1.gz) 86 Kb LPC: Ligand-Protein Contacts for 3WAN CSU: Contacts of Structural Units for 3WAN Structure Factors (981 Kb) Retrieve 3WAN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WAN from S2C, [Save to disk] Re-refined 3wan structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WAN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WAN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WAN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wan] [3wan_B] [3wan_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3WAN

Community annotation for 3WAN at PDBWiki (http://pdbwiki.org)

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