3WBP	Carbohydrate Binding Protein	date	May 20, 2013
title	Crystal Structure Of Carbohydrate Recognition Domain Of Bloo Dendritic Cell Antigen-2 (Bdca2) Lectin (Crystal Form-1)
authors	M.Nagae, A.Ikeda, Y.Kitago, N.Matsumoto, K.Yamamoto, Y.Yamaguchi
compound		source
Molecule: C-Type Lectin Domain Family 4 Member C Chain: A, B Fragment: Unp Residues 83-210 Synonym: Blood Dendritic Cell Antigen 2, Bdca-2, C-Type Lec Superfamily Member 7, Dendritic Lectin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bdca2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcold-Tev Vector
symmetry	Space Group: P 42	R_factor 0.254 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.115 82.115 44.732 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	EDO	enzyme
Primary reference	Crystal structures of carbohydrate recognition domain of blood dendritic cell antigen-2 (BDCA2) reveal a common domain-swapped dimer., Nagae M, Ikeda A, Kitago Y, Matsumoto N, Yamamoto K, Yamaguchi Y, Proteins. 2013 Dec 27. doi: 10.1002/prot.24504. PMID:24425442

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3wbp.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 3WBP CSU: Contacts of Structural Units for 3WBP Structure Factors (1670 Kb) Retrieve 3WBP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WBP from S2C, [Save to disk] Re-refined 3wbp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WBP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WBP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WBP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wbp_A] [3wbp_B] [3wbp] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WBP: [CLECT ] by SMART

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