3WCF Transferase date May 27, 2013
title The Complex Structure Of Hssqs Wtih Ligand,Bph1218
authors N.Shang, Q.Li, T.P.Ko, H.C.Chan, C.H.Huang, F.Ren, Y.Zheng, Z.Zhu, C R.T.Guo
compound source
Molecule: Squalene Synthase
Chain: A, B, C, D, E, F
Fragment: Unp Residues 31-370
Synonym: Sqs, Ss, Fpp, Fpp Farnesyltransferase, Farnesyl-Di Farnesyltransferase;
Ec: 2.5.1.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fdft1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.180 153.190 90.110 90.00 92.37 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand BH8 enzyme Transferase E.C.2.5.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceSqualene synthase as a target for Chagas disease therapeutics., Shang N, Li Q, Ko TP, Chan HC, Li J, Zheng Y, Huang CH, Ren F, Chen CC, Zhu Z, Galizzi M, Li ZH, Rodrigues-Poveda CA, Gonzalez-Pacanowska D, Veiga-Santos P, de Carvalho TM, de Souza W, Urbina JA, Wang AH, Docampo R, Li K, Liu YL, Oldfield E, Guo RT, PLoS Pathog. 2014 May 1;10(5):e1004114. doi: 10.1371/journal.ppat.1004114., eCollection 2014 May. PMID:24789335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (3wcf.pdb1.gz) 331 Kb
  • Biological Unit Coordinates (3wcf.pdb2.gz) 170 Kb
  • Biological Unit Coordinates (3wcf.pdb3.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 3WCF
  • CSU: Contacts of Structural Units for 3WCF
  • Structure Factors (1114 Kb)
  • Retrieve 3WCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WCF from S2C, [Save to disk]
  • Re-refined 3wcf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WCF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WCF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wcf_B] [3wcf_D] [3wcf_F] [3wcf_E] [3wcf_C] [3wcf_A] [3wcf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3WCF
  • Community annotation for 3WCF at PDBWiki (http://pdbwiki.org)

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