3WDO Transport Protein date Jun 19, 2013
title Structure Of E. Coli Yajr Transporter
authors D.Jiang
compound source
Molecule: Mfs Transporter
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Bl21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43
Expression_system_plasmid: Pet28a
symmetry Space Group: P 61 2 2
R_factor 0.271 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.725 128.725 165.149 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.15 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the YajR transporter suggests a transport mechanism based on the conserved motif A., Jiang D, Zhao Y, Wang X, Fan J, Heng J, Liu X, Feng W, Kang X, Huang B, Liu J, Zhang XC, Proc Natl Acad Sci U S A. 2013 Aug 15. PMID:23950222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3wdo.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 3WDO
  • Structure Factors (423 Kb)
  • Retrieve 3WDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WDO from S2C, [Save to disk]
  • Re-refined 3wdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WDO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WDO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wdo_A] [3wdo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3WDO
  • Community annotation for 3WDO at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science