3WGP Hormone Receptor date Aug 07, 2013
title Crystal Structure Analysis Of Vitamin D Receptor
authors S.Itoh, S.Iijima
compound source
Molecule: Vitamin D3 Receptor
Chain: A
Fragment: Unp Residues 120-423
Synonym: Vdr, 1,25-Dihydroxyvitamin D3 Receptor, Nuclear Re Subfamily 1 Group I Member 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vdr, Nr1i1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 21
R_factor 0.167 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.820 51.390 131.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ED9 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3wgp.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3WGP
  • CSU: Contacts of Structural Units for 3WGP
  • Structure Factors (934 Kb)
  • Retrieve 3WGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WGP from S2C, [Save to disk]
  • Re-refined 3wgp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WGP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WGP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wgp] [3wgp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WGP: [HOLI ] by SMART
  • Other resources with information on 3WGP
  • Community annotation for 3WGP at PDBWiki (http://pdbwiki.org)

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