3WGU Hydrolase Transport Protein date Aug 09, 2013
title Crystal Structure Of A Na+-Bound Na+,K+-Atpase Preceding The Without Oligomycin
authors R.Kanai, H.Ogawa, B.Vilsen, F.Cornelius, C.Toyoshima
compound source
Molecule: Sodiumpotassium-Transporting Atpase Subunit Alph
Chain: A, C
Fragment: Unp Residues 5-1020
Synonym: Na+,K+-Atpase Alpha Subunit
Ec: 3.6.3.9
 Organism_scientific: Sus Scrofa
Organism_common: Pigs,Swine,Wild Boar
Organism_taxid: 9823

Molecule: Sodiumpotassium-Transporting Atpase Subunit Beta
Chain: B, D
Synonym: Na+,K+-Atpase Beta Subunit, Sodiumpotassium-Depen Atpase Subunit Beta-1;
Organism_scientific: Sus Scrofa
Organism_common: Pigs,Swine,Wild Boar
Organism_taxid: 9823

Molecule: Na+K+ Atpase Gamma Subunit Transcript Variant A
Chain: G, E
Organism_scientific: Sus Scrofa
Organism_common: Pigs,Swine,Wild Boar
Organism_taxid: 9823
symmetry Space Group: P 21 21 21
R_factor 0.265 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.383 211.600 257.124 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ADP, ALF, CLR, MG, NA, NAG, PC1 enzyme Hydrolase E.C.3.6.3.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B
  • sodium ion export across pla...

    • G, E


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (915 Kb) [Save to disk]
  • Biological Unit Coordinates (3wgu.pdb1.gz) 452 Kb
  • Biological Unit Coordinates (3wgu.pdb2.gz) 454 Kb
  • LPC: Ligand-Protein Contacts for 3WGU
  • CSU: Contacts of Structural Units for 3WGU
  • Structure Factors (1289 Kb)
  • Retrieve 3WGU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WGU from S2C, [Save to disk]
  • Re-refined 3wgu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WGU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WGU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WGU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wgu_C] [3wgu_E] [3wgu_B] [3wgu_A] [3wgu_D] [3wgu] [3wgu_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WGU: [Cation_ATPase_N ] by SMART
    • Other resources with information on 3WGU
  • Community annotation for 3WGU at PDBWiki (http://pdbwiki.org)

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