3WK8	Hydrolase Hydrolase Inhibitor	date	Oct 17, 2013
title	Crystal Structure Of Soluble Epoxide Hydrolase In Complex Wi Fragment Inhibitor
authors	Y.Amano, T.Yamaguchi, E.Tanabe
compound		source
Molecule: Bifunctional Epoxide Hydrolase 2 Chain: A Synonym: Cytosolic Epoxide Hydrolase 2, Ceh, Epoxide Hydrat Soluble Epoxide Hydrolase, Seh, Lipid-Phosphate Phosphatase Ec: 3.3.2.10, 3.1.3.76 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ephx2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 65 2 2	R_factor 0.199 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.473 92.473 243.935 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	MG, PO4, S0E	enzyme	Hydrolase E.C.3.3.2.10 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into binding of inhibitors to soluble epoxide hydrolase gained by fragment screening and X-ray crystallography., Amano Y, Yamaguchi T, Tanabe E, Bioorg Med Chem. 2014 Apr 15;22(8):2427-34. doi: 10.1016/j.bmc.2014.03.001. Epub , 2014 Mar 12. PMID:24656800

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (3wk8.pdb1.gz) 176 Kb LPC: Ligand-Protein Contacts for 3WK8 CSU: Contacts of Structural Units for 3WK8 Structure Factors (614 Kb) Retrieve 3WK8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WK8 from S2C, [Save to disk] Re-refined 3wk8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WK8 in 3D

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Visual 3D analysis of 3WK8

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WK8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wk8] [3wk8_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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