3WME Transport Protein date Nov 18, 2013
title Crystal Structure Of An Inward-Facing Eukaryotic Abc Multidr Transporter
authors A.Kodan, T.Yamaguchi, T.Nakatsu, H.Kato
compound source
Molecule: Atp-Binding Cassette, Sub-Family B, Member 1
Chain: A
Fragment: Tmd And Nbd Domain, Unp Residues 93-696
Engineered: Yes
Organism_scientific: Cyanidioschyzon Merolae
Organism_taxid: 280699
Strain: 10d
Gene: Cmd148c, Cyme_cmd148c
Expression_system: Komagataella Pastoris
Expression_system_common: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Smd1163
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppicz-A
symmetry Space Group: H 3 2
R_factor 0.209 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.312 180.312 152.332 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand DMU enzyme
Gene CYME
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for gating mechanisms of a eukaryotic P-glycoprotein homolog., Kodan A, Yamaguchi T, Nakatsu T, Sakiyama K, Hipolito CJ, Fujioka A, Hirokane R, Ikeguchi K, Watanabe B, Hiratake J, Kimura Y, Suga H, Ueda K, Kato H, Proc Natl Acad Sci U S A. 2014 Mar 3. PMID:24591620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (3wme.pdb1.gz) 182 Kb
  • Biological Unit Coordinates (3wme.pdb2.gz) 362 Kb
  • LPC: Ligand-Protein Contacts for 3WME
  • CSU: Contacts of Structural Units for 3WME
  • Structure Factors (863 Kb)
  • Retrieve 3WME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WME from S2C, [Save to disk]
  • Re-refined 3wme structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WME
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WME, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wme] [3wme_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WME: [AAA ] by SMART
  • Other resources with information on 3WME
  • Community annotation for 3WME at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science