3WMG Transport Protein Inhibitor date Nov 18, 2013
title Crystal Structure Of An Inward-Facing Eukaryotic Abc Multidr Transporter G277va278va279v Mutant In Complex With An Cyc Peptide Inhibitor, Acap
authors A.Kodan, T.Yamaguchi, T.Nakatsu, K.Sakiyama, C.J.Hipolito, A.Fuji R.Hirokane, K.Ikeguchi, B.Watanabe, J.Hirtake, Y.Kimura, H.Suga, H.Kato
compound source
Molecule: Atp-Binding Cassette, Sub-Family B, Member 1
Chain: A
Fragment: Tmd And Nbd Domain, Unp Residues 93-696
Engineered: Yes
Mutation: Yes
Organism_scientific: Cyanidioschyzon Merolae
Organism_taxid: 45157
Gene: Cyme_cmd148c
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
Expression_system_strain: Ad1-8u
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pabc3

Molecule: Anti-Cmabcb1 Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Selected By The Rapid System Protocol
symmetry Space Group: H 3 2
R_factor 0.219 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.490 180.490 153.164 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACE, DMU, DTR, TRS enzyme
Gene CYME
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for gating mechanisms of a eukaryotic P-glycoprotein homolog., Kodan A, Yamaguchi T, Nakatsu T, Sakiyama K, Hipolito CJ, Fujioka A, Hirokane R, Ikeguchi K, Watanabe B, Hiratake J, Kimura Y, Suga H, Ueda K, Kato H, Proc Natl Acad Sci U S A. 2014 Mar 3. PMID:24591620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (3wmg.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 3WMG
  • CSU: Contacts of Structural Units for 3WMG
  • Structure Factors (587 Kb)
  • Retrieve 3WMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WMG from S2C, [Save to disk]
  • Re-refined 3wmg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WMG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WMG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wmg] [3wmg_A] [3wmg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WMG: [AAA ] by SMART
  • Other resources with information on 3WMG
  • Community annotation for 3WMG at PDBWiki (http://pdbwiki.org)

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