4V8K Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form date
authors Niwa, S., Takeda, K., Wang-Otomo, Z.Y., Miki, K.
compound source
symmetry
R_factor
R_Free 0.3564
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.01
note 4V8K supersedes 3WMN, 3WMO
Gene
Ontology
ChainFunctionProcessComponent
AC, BC


AH, BH
  • electron transporter, transf...


    • AM, BM


    BB, AT, B6, BN, AB, BP, BE, AJ, AG, AP, BT, AN, AE, BX, B4, A2, A8, BG, AZ, BJ, AX, BZ, AV, B2, B8, B0, A6, BV, A4, AR, BR, A0
  • electron transporter, transf...


    • BL, AL


    BQ, BW, AO, AY, B1, BO, AU, BY, AA, BF, BI, AI, AQ, B7, B3, BA, AK, A1, AD, BS, AF, A3, BU, AS, A7, B5, BK, A5, AW, B9, A9, BD
  • electron transporter, transf...


    • Primary referenceStructure of the LH1-RC complex from Thermochromatium tepidum at 3.0 A, Niwa S, Yu LJ, Takeda K, Hirano Y, Kawakami T, Wang-Otomo ZY, Miki K, Nature. 2014 Mar 26. doi: 10.1038/nature13197. PMID:24670637
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1501 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V8K
  • Structure Factors (1515 Kb)
  • Retrieve 4V8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V8K from S2C, [Save to disk]
    • View 4V8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V8K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v8k_AA] [4v8k_A0] [4v8k_AK] [4v8k_AH] [4v8k_B0] [4v8k_A4] [4v8k_AT] [4v8k_BQ] [4v8k_BX] [4v8k_A3] [4v8k_B6] [4v8k_BM] [4v8k_AY] [4v8k_AE] [4v8k_B4] [4v8k_BF] [4v8k_AI] [4v8k_A7] [4v8k_BL] [4v8k_BY] [4v8k_BB] [4v8k_BU] [4v8k_BC] [4v8k_AW] [4v8k_AQ] [4v8k_B2] [4v8k_A5] [4v8k_BH] [4v8k_AB] [4v8k] [4v8k_AX] [4v8k_BT] [4v8k_AL] [4v8k_BN] [4v8k_B8] [4v8k_BJ] [4v8k_AO] [4v8k_BA] [4v8k_AJ] [4v8k_BI] [4v8k_AN] [4v8k_AG] [4v8k_A1] [4v8k_A8] [4v8k_BD] [4v8k_B3] [4v8k_BS] [4v8k_BG] [4v8k_AU] [4v8k_BE] [4v8k_BW] [4v8k_B9] [4v8k_AS] [4v8k_A2] [4v8k_BP] [4v8k_A9] [4v8k_AF] [4v8k_BR] [4v8k_AZ] [4v8k_AV] [4v8k_AM] [4v8k_AC] [4v8k_B7] [4v8k_BO] [4v8k_B1] [4v8k_BK] [4v8k_A6] [4v8k_BV] [4v8k_AP] [4v8k_BZ] [4v8k_AD] [4v8k_B5] [4v8k_AR]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4V8K
  • Community annotation for 4V8K at PDBWiki (http://pdbwiki.org)

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