3WO9 Immune System date Dec 20, 2013
title Crystal Structure Of The Lamprey Variable Lymphocyte Recepto
authors R.Kanda, Y.Sutoh, J.Kasamatsu, K.Maenaka, M.Kasahara, T.Ose
compound source
Molecule: Variable Lymphocyte Receptor C
Chain: A
Fragment: Vlrc Ectodomain, Unp Residues 25-246
Engineered: Yes
Organism_scientific: Lethenteron Camtschaticum
Organism_common: Japanese Lamprey
Organism_taxid: 980415
Gene: Vlrc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-26(B)
symmetry Space Group: P 21 21 2
R_factor 0.181 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.157 37.229 55.133 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3wo9.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 3WO9
  • Structure Factors (161 Kb)
  • Retrieve 3WO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WO9 from S2C, [Save to disk]
  • Re-refined 3wo9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WO9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WO9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wo9] [3wo9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3WO9: [LRR] [LRRNT] [LRR_TYP ] by SMART
  • Other resources with information on 3WO9
  • Community annotation for 3WO9 at PDBWiki (http://pdbwiki.org)

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