3WOR Hydrolase Hormone date Dec 29, 2013
title Crystal Structure Of The Dap Bii Octapeptide Complex
authors Y.Sakamoto, Y.Suzuki, I.Iizuka, C.Tateoka, S.Roppongi, M.Fujimoto T.Nonaka, W.Ogasawara, N.Tanaka
compound source
Molecule: Dipeptidyl Aminopeptidase Bii
Chain: A, B
Synonym: Dap Bii
Ec: 3.4.14.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudoxanthomonas Mexicana
Organism_taxid: 128785
Strain: Wo24
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Angiotensin II
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide
symmetry Space Group: P 43 21 2
R_factor 0.166 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.008 122.008 219.157 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL, ZN enzyme Hydrolase E.C.3.4.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceS46 peptidases are the first exopeptidases to be members of clan PA., Sakamoto Y, Suzuki Y, Iizuka I, Tateoka C, Roppongi S, Fujimoto M, Inaka K, Tanaka H, Masaki M, Ohta K, Okada H, Nonaka T, Morikawa Y, Nakamura KT, Ogasawara W, Tanaka N, Sci Rep. 2014 May 15;4:4977. doi: 10.1038/srep04977. PMID:24827749
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (3wor.pdb1.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 3WOR
  • CSU: Contacts of Structural Units for 3WOR
  • Structure Factors (1836 Kb)
  • Retrieve 3WOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WOR from S2C, [Save to disk]
  • Re-refined 3wor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WOR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WOR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wor_D] [3wor_A] [3wor_B] [3wor_C] [3wor]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3WOR
  • Community annotation for 3WOR at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science