3WTU	Transcription Dna	date	Apr 21, 2014
title	Crystal Structure Of The Complex Comprised Of Ets1 (V170a), Cbfbeta, And The Tcralpha Gene Enhancer Dna
authors	M.Shiina, K.Hamada, K.Ogata
compound		source
Molecule: Runt-Related Transcription Factor 1 Chain: A, F Fragment: Unp Residues 60-263 Synonym: Acute Myeloid Leukemia 1 Protein, Core-Binding Fac Subunit Alpha-2, Cbf-Alpha-2, Oncogene Aml-1, Polyomavirus Binding Protein 2 Alpha B Subunit, Pea2-Alpha B, Pebp2-Alph Enhancer Factor 1 Alpha B Subunit, Sl3akv Core-Binding Fac B Subunit; Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Aml1, Cbfa2, Pebp2ab, Runx1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23a
Molecule: Core-Binding Factor Subunit Beta Chain: B, G Fragment: Unp Residues 1-142 Synonym: Cbf-Beta, Polyomavirus Enhancer-Binding Protein 2 Subunit, Pea2-Beta, Pebp2-Beta, Sl3-3 Enhancer Factor 1 Sub Sl3akv Core-Binding Factor Beta Subunit; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Cbfb, Pebp2b, Pebpb2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23a
Molecule: Protein C-Ets-1 Chain: C, H Fragment: Unp Residues 276-441 Synonym: P54 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ets1, Ewsr2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23a
Molecule: Dna (5'-D(Gpapapgpcpcpapcpaptpcpcptp 3'); Chain: D, I Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Apgpapgpgpaptpgptpgpgpcptp 3'); Chain: E, J Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.232 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.558 102.110 194.945 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
Gene Ontology	Chain Function Process Component F, A G, B H, C
Primary reference	A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions., Shiina M, Hamada K, Inoue-Bungo T, Shimamura M, Uchiyama A, Baba S, Sato K, Yamamoto M, Ogata K, J Mol Biol. 2014 Jul 29. pii: S0022-2836(14)00368-4. doi:, 10.1016/j.jmb.2014.07.020. PMID:25083921

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk] Biological Unit Coordinates (3wtu.pdb1.gz) 73 Kb Biological Unit Coordinates (3wtu.pdb2.gz) 70 Kb CSU: Contacts of Structural Units for 3WTU Structure Factors (371 Kb) Retrieve 3WTU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WTU from S2C, [Save to disk] Re-refined 3wtu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WTU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WTU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WTU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wtu_F] [3wtu] [3wtu_C] [3wtu_G] [3wtu_J] [3wtu_I] [3wtu_D] [3wtu_H] [3wtu_E] [3wtu_B] [3wtu_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WTU: [ETS ] by SMART

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