3WUW Protein Binding date May 06, 2014
title Kir3dl1 In Complex With Hla-B57:01.I80t
authors J.P.Vivian, J.Rossjohn
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-57 Alph
Chain: A
Fragment: Hla-B57:01 Extracellular Domain, Unp Residues 25
Synonym: Bw-57, Mhc Class I Antigen B57
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hla-B57:01, Hlab
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-30

Molecule: Beta-2-Microglobulin
Chain: B
Fragment: Beta 2 Microglobulin, Unp Residues 22-119
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Beta 2 Microglobulin, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-30

Molecule: Peptide
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthesised Peptide

Molecule: Killer Cell Immunoglobulin-Like Receptor 3dl1
Chain: G
Fragment: Kir3dl1001 Extracellular Domains, Unp Residues 2
Synonym: Cd158 Antigen-Like Family Member E, Hla-Bw4-Specif Inhibitory Nk Cell Receptor, Mhc Class I Nk Cell Receptor, Killer-Associated Transcript 3, Nkat-3, P70 Natural Killer Receptor Clones Cl-2cl-11, P70 Nk Receptor Cl-2cl-11;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd158e, Kir3dl1, Kir3dl1001, Nkat3, Nkb1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: P 1
R_factor 0.198 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.058 61.494 66.356 94.66 99.58 109.14
method X-Ray Diffractionresolution 2.00 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

    • Primary referenceMutational and structural analysis of KIR3DL1 reveals a lineage-defining allotypic dimorphism that impacts both HLA and peptide sensitivity., O'Connor GM, Vivian JP, Widjaja JM, Bridgeman JS, Gostick E, Lafont BA, Anderson SK, Price DA, Brooks AG, Rossjohn J, McVicar DW, J Immunol. 2014 Mar 15;192(6):2875-84. doi: 10.4049/jimmunol.1303142. Epub 2014, Feb 21. PMID:24563253
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3wuw.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 3WUW
  • CSU: Contacts of Structural Units for 3WUW
  • Structure Factors (875 Kb)
  • Retrieve 3WUW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WUW from S2C, [Save to disk]
  • Re-refined 3wuw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WUW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WUW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WUW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wuw_G] [3wuw_B] [3wuw_C] [3wuw_A] [3wuw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3WUW: [IG] [IG_like] [IGc1 ] by SMART
    • Other resources with information on 3WUW
  • Community annotation for 3WUW at PDBWiki (http://pdbwiki.org)

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