3X12	Immune System	date	Oct 24, 2014
title	Crystal Structure Of Hla-B57:01.I80n
authors	J.P.Vivian, J.Rossjohn
compound		source
Molecule: Hla Class I Histocompatibility Antigen, B-57 Alph Chain: A Fragment: Hla-B57:01 Extracellular Domain, Unp Residues 25 Synonym: Bw-57, Mhc Class I Antigen B57 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-B, Hlab Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-30
Molecule: Beta-2-Microglobulin Chain: B Fragment: Unp Residues 21-119 Synonym: Beta-2-Microglobulin Form Pi 5.3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-30
Molecule: Ig Kappa Chain C Region Chain: C Fragment: Unp Residues 1-9 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Human Peptide Synthetically Generated
symmetry	Space Group: P 1 21 1	R_factor 0.184 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.334 49.310 71.001 90.00 99.26 90.00
method	X-Ray Diffraction	resolution	1.80 Å
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	The Interaction of KIR3DL1*001 with HLA Class I Molecules Is Dependent upon Molecular Microarchitecture within the Bw4 Epitope., Saunders PM, Vivian JP, Baschuk N, Beddoe T, Widjaja J, O'Connor GM, Hitchen C, Pymm P, Andrews DM, Gras S, McVicar DW, Rossjohn J, Brooks AG, J Immunol. 2014 Dec 5. pii: 1402542. PMID:25480565

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (3x12.pdb1.gz) 69 Kb CSU: Contacts of Structural Units for 3X12 Structure Factors (954 Kb) Retrieve 3X12 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3X12 from S2C, [Save to disk] Re-refined 3x12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3X12 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3X12

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3X12, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3x12_A] [3x12_C] [3x12_B] [3x12] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3X12: [IGc1 ] by SMART

Other resources with information on 3X12

Community annotation for 3X12 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---