3X29 Cell Adhesion date Dec 13, 2014
title Crystal Structure Of Mouse Claudin-19 In Complex With C-Term Fragment Of Clostridium Perfringens Enterotoxin
authors Y.Saitoh, H.Suzuki, K.Tani, K.Nishikawa, K.Irie, Y.Ogura, A.Tamura S.Tsukita, Y.Fujiyoshi
compound source
Molecule: Claudin-19
Chain: A, C
Fragment: Tm Region, Unp Residues 1-185
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Cldn19
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac1

Molecule: Heat-Labile Enterotoxin B Chain
Chain: B, D
Fragment: Unp Residues 203-319
Engineered: Yes
Mutation: Yes

Organism_scientific: Clostridium Perfringens
Organism_taxid: 1502
Gene: Cpe
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.251 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.860 122.357 132.594 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceTight junctions. Structural insight into tight junction disassembly by Clostridium perfringens enterotoxin., Saitoh Y, Suzuki H, Tani K, Nishikawa K, Irie K, Ogura Y, Tamura A, Tsukita S, Fujiyoshi Y, Science. 2015 Feb 13;347(6223):775-8. doi: 10.1126/science.1261833. PMID:25678664
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3x29.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3x29.pdb2.gz) 43 Kb
  • CSU: Contacts of Structural Units for 3X29
  • Structure Factors (153 Kb)
  • Retrieve 3X29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3X29 from S2C, [Save to disk]
  • Re-refined 3x29 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3X29 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3X29
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3X29, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3x29_D] [3x29_A] [3x29_B] [3x29_C] [3x29]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3X29
  • Community annotation for 3X29 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science