3ZBF Transferase date Nov 08, 2012
title Structure Of Human Ros1 Kinase Domain In Complex With Crizot
authors M.Mctigue, Y.Deng, W.Liu, A.Brooun, A.Stewart
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Ros
Chain: A
Fragment: Kinase Domain, Residues 1934-2232
Synonym: Proto-Oncogene C-Ros, Proto-Oncogene C-Ros-1, Rece Tyrosine Kinase C-Ros Oncogene 1, C-Ros Receptor Tyrosine K
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 64
R_factor 0.233 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.854 106.854 50.357 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand VGH enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAcquired Resistance to Crizotinib from a Mutation in CD74-ROS1., Awad MM, Katayama R, McTigue M, Liu W, Deng YL, Brooun A, Friboulet L, Huang D, Falk MD, Timofeevski S, Wilner KD, Lockerman EL, Khan TM, Mahmood S, Gainor JF, Digumarthy SR, Stone JR, Mino-Kenudson M, Christensen JG, Iafrate AJ, Engelman JA, Shaw AT, N Engl J Med. 2013 Jun 1. PMID:23724914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3zbf.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3ZBF
  • CSU: Contacts of Structural Units for 3ZBF
  • Structure Factors (250 Kb)
  • Retrieve 3ZBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZBF from S2C, [Save to disk]
  • Re-refined 3zbf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZBF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZBF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zbf] [3zbf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZBF: [TyrKc ] by SMART
  • Other resources with information on 3ZBF
  • Community annotation for 3ZBF at PDBWiki (http://pdbwiki.org)

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