3ZD0 Transport Protein date Nov 23, 2012
title The Solution Structure Of Monomeric Hepatitis C Virus P7 Yie Inhibitors Of Virion Release
authors T.L.Foster, G.Sthompson, A.P.Kalverda, J.Kankanala, J.Thompson, A.M.Barker, D.Clarke, M.Noerenberg, A.R.Pearson, D.J.Rowlands, S.W.Homans, M.Harris, R.Foster, S.D.C.Griffin
compound source
Molecule: P7 Protein
Chain: A
Fragment: Residues 747-809
Engineered: Yes
Other_details: Flag Tag At Residues Upto And Including Resi
 Organism_scientific: Hepatitis C Virus
Organism_common: Hcv
Organism_taxid: 11103
Strain: 1b
Variant: J4 Isolate
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex6p1
Expression_system_plasmid: Pgex-Flagp7(J4)
methodSolution NMR
Primary referenceStructure-guided design affirms inhibitors of hepatitis C virus p7 as a viable class of antivirals targeting virion release., Foster TL, Thompson GS, Kalverda AP, Kankanala J, Bentham M, Wetherill LF, Thompson J, Barker AM, Clarke D, Noerenberg M, Pearson AR, Rowlands DJ, Homans SW, Harris M, Foster R, Griffin S, Hepatology. 2013 Aug 12. doi: 10.1002/hep.26685. PMID:24022996
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (408 Kb) [Save to disk]
  • Biological Unit Coordinates (3zd0.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 3ZD0
  • Original NMR restraints for 3ZD0 from PDB
  • Retrieve 3ZD0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZD0 from S2C, [Save to disk]
    • View 3ZD0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ZD0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZD0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zd0] [3zd0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3ZD0
  • Community annotation for 3ZD0 at PDBWiki (http://pdbwiki.org)

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