3ZDI Transferase Peptide date Nov 27, 2012
title Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Inhibitor 7d
authors A.E.Oberholzer, L.H.Pearl
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A
Fragment: Residues 35-384
Synonym: Gsk-3 Beta, Serinethreonine-Protein Kinase Gsk3b
Ec: 2.7.11.26, 2.7.11.1
Engineered: Yes
Other_details: Phosphotyrosine At A216
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Axin-1
Chain: B
Fragment: Residues 383-400
Synonym: Axis Inhibition Protein 1, Haxin
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.147 76.157 86.545 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand PO4, PTR, UGJ enzyme Transferase E.C.2.7.11.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference3,6-Diamino-4-(2-halophenyl)-2-benzoylthieno[2,3-b]pyridine-5-carbonitriles Are Selective Inhibitors of Plasmodium falciparum Glycogen Synthase Kinase-3., Fugel W, Oberholzer AE, Gschloessl B, Dzikowski R, Pressburger N, Preu L, Pearl LH, Baratte B, Ratin M, Okun I, Doerig C, Kruggel S, Lemcke T, Meijer L, Kunick C, J Med Chem. 2012 Dec 27. PMID:23214499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (3zdi.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 3ZDI
  • CSU: Contacts of Structural Units for 3ZDI
  • Structure Factors (90 Kb)
  • Retrieve 3ZDI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZDI from S2C, [Save to disk]
  • Re-refined 3zdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZDI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZDI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zdi] [3zdi_B] [3zdi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZDI: [S_TKc ] by SMART
  • Other resources with information on 3ZDI
  • Community annotation for 3ZDI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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