3ZDQ Hydrolase date Nov 30, 2012
title Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (Nucleotide-Free Form)
authors A.C.W.Pike, C.A.Shintre, T.Krojer, F.Von Delft, M.Vollmar, S.Mukh N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, E.P.Ca
compound source
Molecule: Atp-Binding Cassette Sub-Family B Member 10, Mito
Chain: A
Fragment: Abc Transporter, Residues 152-738
Synonym: Atp-Binding Cassette Transporter 10, Abc Transport Protein, Mitochondrial Atp-Binding Cassette 2, M-Abc2, Atp- Cassette Sub-Family B Member 10;
Ec: 3.6.3.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Ct10hf-Lic
symmetry Space Group: P 31 2 1
R_factor 0.202 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
177.790 177.790 50.060 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand CDL, GLY, LMT enzyme Hydrolase E.C.3.6.3.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of ABCB10, a human ATP-binding cassette transporter in apo- and nucleotide-bound states., Shintre CA, Pike AC, Li Q, Kim JI, Barr AJ, Goubin S, Shrestha L, Yang J, Berridge G, Ross J, Stansfeld PJ, Sansom MS, Edwards AM, Bountra C, Marsden BD, von Delft F, Bullock AN, Gileadi O, Burgess-Brown NA, Carpenter EP, Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9710-5. doi:, 10.1073/pnas.1217042110. Epub 2013 May 28. PMID:23716676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (3zdq.pdb1.gz) 358 Kb
  • LPC: Ligand-Protein Contacts for 3ZDQ
  • CSU: Contacts of Structural Units for 3ZDQ
  • Structure Factors (778 Kb)
  • Retrieve 3ZDQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZDQ from S2C, [Save to disk]
  • Re-refined 3zdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZDQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZDQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zdq_A] [3zdq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZDQ: [AAA ] by SMART
  • Other resources with information on 3ZDQ
  • Community annotation for 3ZDQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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