3ZDT Transferase date Nov 30, 2012
title Crystal Structure Of Basic Patch Mutant Fak Ferm Domain Fak3 K216a, K218a, R221a, K222a
authors G.M.Goni, C.Epifano, J.Boskovic, M.Camacho-Artacho, J.Zhou, M.T.M M.J.Eck, L.Kremer, F.Graeter, F.L.Gervasio, M.Perez-Moreno, D.Li
compound source
Molecule: Focal Adhesion Kinase 1
Chain: A, B
Fragment: Ferm Domain, Residues 31-405
Synonym: Fak, Fadk 1, Focal Adhesion Kinase-Related Nonkina P41p43frnk, Protein-Tyrosine Kinase 2, P125fak, Pp125fak;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.567 175.527 60.032 90.00 93.94 90.00
method X-Ray Diffractionresolution 3.15 Å
ligand
enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePhosphatidylinositol 4,5-bisphosphate triggers activation of focal adhesion kinase by inducing clustering and conformational changes., Goni GM, Epifano C, Boskovic J, Camacho-Artacho M, Zhou J, Bronowska A, Martin MT, Eck MJ, Kremer L, Grater F, Gervasio FL, Perez-Moreno M, Lietha D, Proc Natl Acad Sci U S A. 2014 Jul 21. pii: 201317022. PMID:25049397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (3zdt.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (3zdt.pdb2.gz) 110 Kb
  • CSU: Contacts of Structural Units for 3ZDT
  • Structure Factors (214 Kb)
  • Retrieve 3ZDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZDT from S2C, [Save to disk]
  • Re-refined 3zdt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZDT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZDT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zdt_B] [3zdt_A] [3zdt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZDT: [B41 ] by SMART
  • Other resources with information on 3ZDT
  • Community annotation for 3ZDT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science