3ZDX	Cell Adhesion Immune System	date	Dec 03, 2012
title	Integrin Alphaiib Beta3 Headpiece And Rgd Peptide Complex
authors	J.H.Zhu, J.Q.Zhu, T.A.Springer
compound		source
Molecule: Integrin Alpha-Iib Chain: A, C Fragment: Integrin Headpiece, Residues 32-488 Synonym: Gpalpha Iib, Gpiib, Platelet Membrane Glycoprotein Cd41, Integrin Alpha-Iib Heavy Chain; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Cho Lec 3.2.1.8 Expression_system_vector_type: Plasmid Expression_system_vector: Pcdna3.1
Molecule: Integrin Beta-3 Chain: B, D Fragment: Integrin Headpiece, Residues 27-498 Synonym: Platelet Membrane Glycoprotein Iiia, Gpiiia, Cd61 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Cho Lec 3.2.1.8 Expression_system_vector_type: Plasmid Expression_system_vector: Pef1
Molecule: 10e5 Fab, Heavy Chain Chain: E, H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090
Molecule: 10e5 Fab, Light Chain Chain: F, L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090
symmetry	Space Group: P 21 21 2	R_factor 0.163 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 259.710 144.960 104.770 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.45 Å
ligand	BMA, CA, CL, GOL, MAN, MN, NAG, SO4	enzyme
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Complete integrin headpiece opening in eight steps., Zhu J, Zhu J, Springer TA, J Cell Biol. 2013 Jun 24;201(7):1053-68. doi: 10.1083/jcb.201212037. PMID:23798730

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1299 Kb) [Save to disk] Biological Unit Coordinates (3zdx.pdb1.gz) 648 Kb Biological Unit Coordinates (3zdx.pdb2.gz) 645 Kb LPC: Ligand-Protein Contacts for 3ZDX CSU: Contacts of Structural Units for 3ZDX Structure Factors (2294 Kb) Retrieve 3ZDX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZDX from S2C, [Save to disk] Re-refined 3zdx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZDX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZDX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZDX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zdx_B] [3zdx_D] [3zdx_A] [3zdx_E] [3zdx_H] [3zdx] [3zdx_F] [3zdx_L] [3zdx_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3ZDX: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART

Other resources with information on 3ZDX

Community annotation for 3ZDX at PDBWiki (http://pdbwiki.org)

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