3ZE0	Cell Adhesion Immune System Peptide	date	Dec 03, 2012
title	Integrin Alphaiib Beta3 Headpiece And Rgd Peptide Complex
authors	J.H.Zhu, J.Q.Zhu, T.A.Springer
compound		source
Molecule: Integrin Alpha-Iib Chain: A, C Fragment: Residues 32-488 Synonym: Gpalpha Iib, Gpiib, Platelet Membrane Glycoprotein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Cho Lec 3.2.1.8 Expression_system_vector: Pcdna3.1
Molecule: Integrin Beta-3 Chain: B, D Fragment: Residues 27-498 Synonym: Platelet Membrane Glycoprotein Iiia, Gpiiia Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Cho Lec 3.2.1.8 Expression_system_vector: Pef1
Molecule: 10e5 Fab Heavy Chain Chain: E, H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090 Other_details: Hybridoma
Molecule: 10e5 Fab Light Chain Chain: F, L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090 Other_details: Hybridoma
Molecule: Rgd Peptide Chain: I, J Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.185 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 259.640 144.680 104.590 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.95 Å
ligand	BMA, CA, CL, MAN, MN, NAG, SO4	enzyme
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Complete integrin headpiece opening in eight steps., Zhu J, Zhu J, Springer TA, J Cell Biol. 2013 Jun 24;201(7):1053-68. doi: 10.1083/jcb.201212037. PMID:23798730

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1293 Kb) [Save to disk] Biological Unit Coordinates (3ze0.pdb1.gz) 643 Kb Biological Unit Coordinates (3ze0.pdb2.gz) 646 Kb LPC: Ligand-Protein Contacts for 3ZE0 CSU: Contacts of Structural Units for 3ZE0 Structure Factors (1119 Kb) Retrieve 3ZE0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZE0 from S2C, [Save to disk] Re-refined 3ze0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZE0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZE0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZE0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ze0_E] [3ze0_A] [3ze0] [3ze0_F] [3ze0_I] [3ze0_B] [3ze0_H] [3ze0_D] [3ze0_L] [3ze0_J] [3ze0_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3ZE0: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART

Other resources with information on 3ZE0

Community annotation for 3ZE0 at PDBWiki (http://pdbwiki.org)

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