3ZK1 Membrane Protein date Jan 21, 2013
title Crystal Structure Of The Sodium Binding Rotor Ring At Ph 5.3
authors S.Schulz, T.Meier, O.Yildiz
compound source
Molecule: Atp Synthase Subunit C
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V;
Synonym: Atp Synthase Rotor Ring, Atp Synthase F(0) Sector F-Type Atpase Subunit C, F-Atpase Subunit C, Lipid-Binding
Engineered: Yes
Organism_scientific: Fusobacterium Nucleatum
Organism_taxid: 851
Atcc: 25568
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dk8
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.770 83.900 150.990 90.00 112.85 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand DMU, LMT, NA, TAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U


Primary referenceA new type of na(+)-driven ATP synthase membrane rotor with a two-carboxylate ion-coupling motif., Schulz S, Iglesias-Cans M, Krah A, Yildiz O, Leone V, Matthies D, Cook GM, Faraldo-Gomez JD, Meier T, PLoS Biol. 2013 Jun;11(6):e1001596. doi: 10.1371/journal.pbio.1001596. Epub 2013 , Jun 25. PMID:23824040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (608 Kb) [Save to disk]
  • Biological Unit Coordinates (3zk1.pdb1.gz) 301 Kb
  • Biological Unit Coordinates (3zk1.pdb2.gz) 298 Kb
  • LPC: Ligand-Protein Contacts for 3ZK1
  • CSU: Contacts of Structural Units for 3ZK1
  • Structure Factors (1246 Kb)
  • Retrieve 3ZK1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZK1 from S2C, [Save to disk]
  • Re-refined 3zk1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZK1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZK1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZK1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zk1_J] [3zk1_H] [3zk1_C] [3zk1_L] [3zk1_E] [3zk1] [3zk1_G] [3zk1_S] [3zk1_U] [3zk1_D] [3zk1_P] [3zk1_A] [3zk1_O] [3zk1_T] [3zk1_Q] [3zk1_K] [3zk1_F] [3zk1_M] [3zk1_B] [3zk1_N] [3zk1_I] [3zk1_V] [3zk1_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZK1
  • Community annotation for 3ZK1 at PDBWiki (http://pdbwiki.org)

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