3ZLR Apoptosis date Feb 04, 2013
title Crystal Structure Of Bcl-Xl In Complex With Inhibitor (Wehi-
authors P.E.Czabotar, G.L.Lessene, B.J.Smith, P.M.Colman
compound source
Molecule: Bcl-2-Like Protein 1
Chain: A, B
Fragment: Residues 1-26,83-209
Synonym: Bcl2-L-1, Apoptosis Regulator Bcl-X, Bcl-Xl
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-6p3
symmetry Space Group: P 43 2 2
R_factor 0.158 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.241 56.241 211.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.03 Å
ligand EDO, SO4, X0B enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-guided design of a selective BCL-X inhibitor., Lessene G, Czabotar PE, Sleebs BE, Zobel K, Lowes KN, Adams JM, Baell JB, Colman PM, Deshayes K, Fairbrother WJ, Flygare JA, Gibbons P, Kersten WJ, Kulasegaram S, Moss RM, Parisot JP, Smith BJ, Street IP, Yang H, Huang DC, Watson KG, Nat Chem Biol. 2013 Apr 21. doi: 10.1038/nchembio.1246. PMID:23603658
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3zlr.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3ZLR
  • CSU: Contacts of Structural Units for 3ZLR
  • Structure Factors (133 Kb)
  • Retrieve 3ZLR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZLR from S2C, [Save to disk]
  • Re-refined 3zlr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZLR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZLR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZLR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zlr_A] [3zlr] [3zlr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZLR: [BCL] [BH4 ] by SMART
  • Other resources with information on 3ZLR
  • Community annotation for 3ZLR at PDBWiki (http://pdbwiki.org)

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