3ZLY Transferase date Feb 04, 2013
title Crystal Structure Of Mek1 In Complex With Fragment 8
authors K.Amaning, M.Lowinsky, F.Vallee, V.Steier, C.Marcireau, A.Ugolini C.Delorme, G.Mccort, C.Andouche, S.Vougier, S.Llopart, N.Halland
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: A
Fragment: Residues 37-383
Synonym: Map Kinase Kinase 1, Mapkk 1, Mkk1, Erk Activator Mapkerk Kinase 1, Mek 1, Mitogen-Activated Protein Kinase
Ec: 2.7.12.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
symmetry Space Group: P 61 2 2
R_factor 0.199 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.759 76.759 221.768 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.11 Å
ligand NA, YSO enzyme Transferase E.C.2.7.12.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe use of virtual screening and differential scanning fluorimetry for the rapid identification of fragments active against MEK1., Amaning K, Lowinski M, Vallee F, Steier V, Marcireau C, Ugolini A, Delorme C, Foucalt F, McCort G, Derimay N, Andouche C, Vougier S, Llopart S, Halland N, Rak A, Bioorg Med Chem Lett. 2013 Jun 15;23(12):3620-6. doi: 10.1016/j.bmcl.2013.04.003., Epub 2013 Apr 10. PMID:23648182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3zly.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3ZLY
  • CSU: Contacts of Structural Units for 3ZLY
  • Structure Factors (427 Kb)
  • Retrieve 3ZLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZLY from S2C, [Save to disk]
  • Re-refined 3zly structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZLY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZLY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zly] [3zly_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZLY: [S_TKc ] by SMART
  • Other resources with information on 3ZLY
  • Community annotation for 3ZLY at PDBWiki (http://pdbwiki.org)

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