3ZQH Transcription date Jun 09, 2011
title Structure Of Tetracycline Repressor In Complex With Inducer Tip3
authors M.Sevvana, D.Goeke, C.Stoeckle, D.Kaspar, S.Grubmueller, C.Goetz, C.Berens, M.Klotzsche, Y.A.Muller, W.Hillen
compound source
Molecule: Tetracycline Repressor Protein Class B From Trans Tn10, Tetracycline Repressor Protein Class D;
Chain: A
Fragment: Residues 1-187,188-208
Engineered: Yes
Mutation: Yes
Other_details: Chimeric Protein, Residues 1-187 Are From Va Residues 188-208 Are From Variant D;
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Inducer Peptide Tip3
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.350 57.340 57.810 90.00 112.29 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn Exclusive alpha/beta Code Directs Allostery in TetR-Peptide Complexes., Sevvana M, Goetz C, Goeke D, Wimmer C, Berens C, Hillen W, Muller YA, J Mol Biol. 2011 Dec 9. PMID:22178479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3zqh.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 3ZQH
  • CSU: Contacts of Structural Units for 3ZQH
  • Structure Factors (371 Kb)
  • Retrieve 3ZQH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZQH from S2C, [Save to disk]
  • Re-refined 3zqh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZQH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZQH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZQH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zqh_A] [3zqh_C] [3zqh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZQH
  • Community annotation for 3ZQH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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