3ZRL Transferase Peptide date Jun 17, 2011
title Identification Of 2-(4-Pyridyl)Thienopyridinones As Gsk-3bet Inhibitors
authors G.Gentile, G.Bernasconi, A.Pozzan, G.Merlo, P.Marzorati, P.Bambor B.Bax, A.Bridges, C.Brough, P.Carter, G.Cutler, M.Neu, M.Takada
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A, B
Fragment: Residues 23-393
Synonym: Gsk-3 Beta
Ec: 2.7.11.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Proto-Oncogene Frat1
Chain: X, Y
Fragment: Residues 197-226
Synonym: Frequently Rearranged In Advanced T-Cell Lymphomas
Engineered: Yes
Other_details: Frattide Sequence Co-Expressed In Baculoviru Expression)

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: H 3 2
R_factor 0.185 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.231 153.231 201.729 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.48 Å
ligand GOL, PTR, SO4, ZRL BindingDB enzyme Transferase E.C.2.7.11.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of 2-(4-pyridyl)thienopyridinones as GSK-3beta inhibitors., Gentile G, Bernasconi G, Pozzan A, Merlo G, Marzorati P, Bamborough P, Bax B, Bridges A, Brough C, Carter P, Cutler G, Neu M, Takada M, Bioorg Med Chem Lett. 2011 Aug 15;21(16):4823-7. Epub 2011 Jun 29. PMID:21764580
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (3zrl.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 3ZRL
  • CSU: Contacts of Structural Units for 3ZRL
  • Structure Factors (252 Kb)
  • Retrieve 3ZRL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZRL from S2C, [Save to disk]
  • Re-refined 3zrl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZRL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZRL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZRL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zrl_Y] [3zrl_B] [3zrl_X] [3zrl] [3zrl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZRL: [S_TKc ] by SMART
  • Other resources with information on 3ZRL
  • Community annotation for 3ZRL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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