3ZRY Hydrolase date Jun 21, 2011
title Rotor Architecture In The F(1)-C(10)-Ring Complex Of The Yea Synthase
authors M.F.Giraud, A.Dautant
compound source
Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: A, B, C
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, E, F
Ec: 3.6.3.14

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G
Synonym: F-Atpase Gamma Subunit

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba

Molecule: Atp Synthase Subunit Delta, Mitochondrial
Chain: H
Synonym: F-Atpase Delta Subunit
Ec: 3.6.3.14

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba

Molecule: Atp Synthase Catalytic Sector F1 Epsilon Subunit
Chain: I
Synonym: Atp Synthase Subunit Epsilon, Mitochondrial

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba

Molecule: Atp Synthase Subunit 9, Mitochondrial
Chain: J, K, L, M, N, O, P, Q, R, S
Synonym: Lipid-Binding Protein, Oligomycin Resistance Prote

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
symmetry Space Group: P 1 21 1
R_factor 0.317 R_Free 0.339
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.690 174.910 164.260 90.00 93.92 90.00
method X-Ray Diffractionresolution 6.50 Å
ligand ANP, MG enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, A, B


F, E, D


G


H


I


S, N, K, Q, M, L, J, O, P, R


Primary referenceRotor architecture in the yeast and bovine F(1)-c-ring complexes of F-ATP synthase., Giraud MF, Paumard P, Sanchez C, Brethes D, Velours J, Dautant A, J Struct Biol. 2011 Nov 18. PMID:22119846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (606 Kb) [Save to disk]
  • Biological Unit Coordinates (3zry.pdb1.gz) 496 Kb
  • Biological Unit Coordinates (3zry.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 3ZRY
  • CSU: Contacts of Structural Units for 3ZRY
  • Structure Factors (103 Kb)
  • Retrieve 3ZRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZRY from S2C, [Save to disk]
  • Re-refined 3zry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZRY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZRY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zry_I] [3zry_Q] [3zry_B] [3zry_C] [3zry_P] [3zry_G] [3zry] [3zry_O] [3zry_M] [3zry_E] [3zry_S] [3zry_N] [3zry_D] [3zry_J] [3zry_F] [3zry_K] [3zry_R] [3zry_A] [3zry_H] [3zry_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZRY: [AAA ] by SMART
  • Other resources with information on 3ZRY
  • Community annotation for 3ZRY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science