3ZUW Photosynthesis date Jul 20, 2011
title Photosynthetic Reaction Centre Mutant With Tyr L128 Replaced
authors K.Gibasiewicz, M.Pajzderska, J.A.Potter, P.K.Fyfe, A.Dobek, K.Bre M.R.Jones
compound source
Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Photosynthetic Reaction Center H Subunit
Engineered: Yes
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063

Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Photosynthetic Reaction Center L Subunit
Engineered: Yes
Mutation: Yes

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Photosynthetic Reaction Center M Subunit
Engineered: Yes

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063
symmetry Space Group: P 31 2 1
R_factor 0.192 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.865 139.865 184.738 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.31 Å
ligand BCL, BPH, FE, LDA, PO4, SPN, U10 enzyme
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


  • L


    M


    Primary referenceMechanism of Recombination of the P(+)H(A)(-) Radical Pair in Mutant Rhodobacter sphaeroides Reaction Centers with Modified Free Energy Gaps Between P(+)B(A)(-) and P(+)H(A)(-)., Gibasiewicz K, Pajzderska M, Potter JA, Fyfe PK, Dobek A, Brettel K, Jones MR, J Phys Chem B. 2011 Nov 10;115(44):13037-50. Epub 2011 Oct 18. PMID:21970763
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (3zuw.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 3ZUW
  • CSU: Contacts of Structural Units for 3ZUW
  • Structure Factors (1191 Kb)
  • Retrieve 3ZUW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZUW from S2C, [Save to disk]
  • Re-refined 3zuw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZUW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZUW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZUW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zuw_L] [3zuw] [3zuw_H] [3zuw_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZUW
  • Community annotation for 3ZUW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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