3ZVV Transferase date Jul 27, 2011
title Fragment Bound To Pi3kinase Gamma
authors S.J.Hughes, D.S.Milan, I.C.Kilty, R.A.Lewthwaite, J.P.Mathias, M.A.O'Reilly, A.Phelan, D.A.Baldock, D.G.Brown
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Fragment: Residues 144-1102
Synonym: Phosphotidylinositol 3 Kinase, Pi3-Kinase Subunit Pi3k-Gamma, Ptdins-3-Kinase Subunit Gamma, Phosphatidylinos Bisphosphate 3-Kinase 110 Kda Catalytic Subunit Gamma, Ptdi Kinase Subunit P110-Gamma, P120-Pi3k;
Ec: 2.7.1.137, 2.7.1.153
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.488 68.031 106.251 90.00 95.16 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand XAZ BindingDB enzyme Transferase E.C.2.7.1.137 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment based discovery of a novel and selective PI3 kinase inhibitor., Hughes SJ, Millan DS, Kilty IC, Lewthwaite RA, Mathias JP, O'Reilly MA, Pannifer A, Phelan A, Stuhmeier F, Baldock DA, Brown DG, Bioorg Med Chem Lett. 2011 Aug 6. PMID:21925880
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]
  • Biological Unit Coordinates (3zvv.pdb1.gz) 296 Kb
  • LPC: Ligand-Protein Contacts for 3ZVV
  • CSU: Contacts of Structural Units for 3ZVV
  • Structure Factors (1778 Kb)
  • Retrieve 3ZVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZVV from S2C, [Save to disk]
  • Re-refined 3zvv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZVV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZVV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zvv] [3zvv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZVV: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 3ZVV
  • Community annotation for 3ZVV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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