3ZYA Transferase date Aug 18, 2011
title Human P38 Map Kinase In Complex With 2-Amino-Phenylamino- Dibenzosuberone
authors J.Romir, S.C.Koeberle, S.A.Laufer, T.Stehle
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Cytokine Suppressive Anti- Inflammatory Drug-Binding Protein, Csaid-Binding Protein, C Kinase Mxi2, Max-Interacting Protein 2, Mitogen-Activated P Kinase P38 Alpha, Map Kinase P38 Alpha, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.155 51.863 167.881 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 2A8 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSkepinone-L is a selective p38 mitogen-activated protein kinase inhibitor., Koeberle SC, Romir J, Fischer S, Koeberle A, Schattel V, Albrecht W, Grutter C, Werz O, Rauh D, Stehle T, Laufer SA, Nat Chem Biol. 2011 Dec 25. doi: 10.1038/nchembio.761. PMID:22198732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (3zya.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 3ZYA
  • CSU: Contacts of Structural Units for 3ZYA
  • Structure Factors (406 Kb)
  • Retrieve 3ZYA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZYA from S2C, [Save to disk]
  • Re-refined 3zya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZYA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZYA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZYA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zya] [3zya_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZYA: [S_TKc ] by SMART
  • Other resources with information on 3ZYA
  • Community annotation for 3ZYA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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