3ZYZ Hydrolase date Aug 30, 2011
title Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glu Bgl1 From Hypocrea Jecorina At 2.1a Resolution.
authors M.Sandgren, T.Kaper, N.E.Mikkelsen, H.Hansson, K.Piens, M.Gudmund E.Larenas, B.Kelemen, S.Karkehabadi
compound source
Molecule: Beta-D-Glucoside Glucohydrolase
Chain: A
Synonym: Beta-Glucosidase
Ec: 3.2.1.21
Organism_scientific: Hypocrea Jecorina
Organism_taxid: 51453
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.065 82.286 136.811 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BGC, GOL, NAG, PEG enzyme Hydrolase E.C.3.2.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBiochemical Characterization and Crystal Structures of a Fungal Family 3 beta-Glucosidase, Cel3A from Hypocrea jecorina., Karkehabadi S, Helmich KE, Kaper T, Hansson H, Mikkelsen NE, Gudmundsson M, Piens K, Fujdala M, Banerjee G, Scott-Craig JS, Walton JD, Phillips GN Jr, Sandgren M, J Biol Chem. 2014 Aug 27. pii: jbc.M114.587766. PMID:25164811
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (3zyz.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 3ZYZ
  • CSU: Contacts of Structural Units for 3ZYZ
  • Structure Factors (568 Kb)
  • Retrieve 3ZYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZYZ from S2C, [Save to disk]
  • Re-refined 3zyz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZYZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZYZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zyz_A] [3zyz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZYZ: [Fn3_like ] by SMART
  • Other resources with information on 3ZYZ
  • Community annotation for 3ZYZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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