409D Rna date Jun 26, 1998
title Crystal Structure Of An Rna R(Ccciuggg) With Three Independe Duplexes Incorporating Tandem I.U Wobbles
authors B.Pan, S.N.Mitra, L.Sun, D.Hart, M.Sundaralingam
compound source
Molecule: Rna (5'-R(Cpcpcpipupgpgpg)-3')
Chain: A, B, C, D, E, F
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.440 43.410 49.390 90.00 104.70 90.00
method X-Ray Diffractionresolution 2.50 Å
Primary referenceCrystal structure of an RNA octamer duplex r(CCCIUGGG)2 incorporating tandem I.U wobbles., Pan B, Mitra SN, Sun L, Hart D, Sundaralingam M, Nucleic Acids Res 1998 Dec 15;26(24):5699-706. PMID:9838002
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (409d.pdb1.gz) 7 Kb
  • Biological Unit Coordinates (409d.pdb2.gz) 7 Kb
  • Biological Unit Coordinates (409d.pdb3.gz) 7 Kb
  • CSU: Contacts of Structural Units for 409D
  • Likely Quarternary Molecular Structure file(s) for 409D
  • Retrieve 409D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 409D from S2C, [Save to disk]
    • View 409D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 409D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 409D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [409d_C] [409d_A] [409d_B] [409d_F] [409d] [409d_D] [409d_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 409D
  • Community annotation for 409D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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