417D Dna date Jul 15, 1998
title A Thymine-Like Base Analogue Forms Wobble Pairs With Adenine
authors P.K.T.Lin, M.H.Schuerman, G.S.Moore, L.Van Meervelt, D.Loakes, D. M.H.Moore
compound source
Molecule: Dna (5'-D(Cpapcpgp(C46)Pg)-3')
Chain: A, B
Engineered: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.338 31.432 44.486 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand C46 enzyme
Primary referenceA thymine-like base analogue forms wobble pairs with adenine in a Z-DNA duplex., Schuerman GS, Van Meervelt L, Loakes D, Brown DM, Kong Thoo Lin P, Moore MH, Salisbury SA, J Mol Biol 1998 Oct 9;282(5):1005-11. PMID:9753550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (417d.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 417D
  • CSU: Contacts of Structural Units for 417D
  • Likely Quarternary Molecular Structure file(s) for 417D
  • Structure Factors (58 Kb)
  • Retrieve 417D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 417D from S2C, [Save to disk]
  • Re-refined 417d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 417D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 417D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 417D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [417d_B] [417d] [417d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 417D
  • Community annotation for 417D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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