430D Rna date Oct 04, 1998
title Structure Of Sarcinricin Loop From Rat 28s Rrna
authors C.C.Correll, A.Munishkin, Y.L.Chan, Z.Ren, I.G.Wool, T.A.Steitz
compound source
Molecule: Sarcinricin Loop From Rat 28s R-Rna
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Rattus Norvegicus
Organism_taxid: 10116
symmetry Space Group: P 61 2 2
R_factor 0.280 R_Free 0.330
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.830 56.830 107.960 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CBV, MG enzyme
Primary referenceCrystal structure of the ribosomal RNA domain essential for binding elongation factors., Correll CC, Munishkin A, Chan YL, Ren Z, Wool IG, Steitz TA, Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13436-41. PMID:9811818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (430d.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 430D
  • CSU: Contacts of Structural Units for 430D
  • Likely Quarternary Molecular Structure file(s) for 430D
  • Retrieve 430D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 430D from S2C, [Save to disk]
    • View 430D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 430D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 430D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [430d_A] [430d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 430D
  • Community annotation for 430D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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