435D Rna date Oct 23, 1998
title 5'-R(Upapgpcpcpcpc)-3', 5'-R(Gpgpgpgpcpupa)-3'
authors U.Mueller, H.Schuebel, M.Sprinzl, U.Heinemann
compound source
Molecule: Rna (5'-R(Upapgpcpcpcpc)-3')
Chain: A, C
Engineered: Yes
 Synthetic: Yes

Molecule: Rna (5'-R(Gpgpgpgpcpupa)-3')
Chain: B, D
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.680 26.697 30.459 104.29 104.22 91.66
method X-Ray Diffractionresolution 1.40 Å
ligand NA enzyme
Primary referenceCrystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution., Mueller U, Schubel H, Sprinzl M, Heinemann U, RNA 1999 May;5(5):670-7. PMID:10334337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (435d.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (435d.pdb2.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 435D
  • CSU: Contacts of Structural Units for 435D
  • Likely Quarternary Molecular Structure file(s) for 435D
  • Structure Factors (220 Kb)
  • Retrieve 435D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 435D from S2C, [Save to disk]
  • Re-refined 435d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 435D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 435D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 435D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [435d_B] [435d] [435d_A] [435d_C] [435d_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 435D
  • Community annotation for 435D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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