454D INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' date
authors Kielkopf, C.L., Erkkila, K.E., Hudson, B.P., Barton, J.K., Rees, D.C.
compound source
symmetry
R_factor
R_Free 0.2100000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.20
ligand 5IU, RHM enzyme
Primary referenceStructure of a photoactive rhodium complex intercalated into DNA., Kielkopf CL, Erkkila KE, Hudson BP, Barton JK, Rees DC, Nat Struct Biol 2000 Feb;7(2):117-21. PMID:10655613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (454d.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (454d.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (454d.pdb3.gz) 20 Kb
  • Biological Unit Coordinates (454d.pdb4.gz) 18 Kb
  • Biological Unit Coordinates (454d.pdb5.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 454D
  • CSU: Contacts of Structural Units for 454D
  • Likely Quarternary Molecular Structure file(s) for 454D
  • Retrieve 454D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 454D from S2C, [Save to disk]
    • View 454D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 454D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 454D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [454d_I] [454d_D] [454d_C] [454d_J] [454d_B] [454d_E] [454d_H] [454d_F] [454d] [454d_A] [454d_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 454D
  • Community annotation for 454D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science